PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv6_149960_rkdn.t1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family bHLH
Protein Properties Length: 453aa    MW: 47865 Da    PI: 6.4481
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv6_149960_rkdn.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH376.3e-12267312555
                         HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         h+++Er RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  Bv6_149960_rkdn.t1 267 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 312
                         99***********************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.5E-17260322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.24E-13260316No hitNo description
PROSITE profilePS5088817.39262311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-16264321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-9267312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-13268317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MREMEGGGGG RGIISHPHSL EELQQSQQQQ QQNGQQPQSQ QQYRESQNDD FLEQMLSNIP  60
NCSWPPTPHD LPSPTSNPNN SNPNSNIALK PGDSPPDDPE SAAAAAAAAV AFHYPFDEAS  120
LVSKLRHQQM NEVTAKSLLL QHQQQFLLSR RTPGDSSPGM LPLPLSLGNT DGVDHSPFKS  180
QGVAEASVQA LYNGFAGSLH ANANPPNQQP FHPPPPPPQG GSLGGGGQNN GVVQAPPASA  240
STGGSSGAGA PQRQRVRARR GQATDPHSIA ERLRRERIAE RMKALQELVP NANKTDKASM  300
LDEIIDYVKF LQLQVKVLSM SRLGGAAAVA PLVADMTSEG GGVGRSGNGT QTASANDSMT  360
VTEHQVAKLM EEDMGSAMQY LQGKGLCLMP ISLATAISTA TSLTRTSLPP TRPHVNGNNH  420
LLLPSIPSNG DGENNGNKAN NTTDSTVKDP CNT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1271276RLRRER
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00659PBMTransfer from Pp3c14_15890Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010682674.10.0PREDICTED: transcription factor bHLH66-like
SwissprotQ9ZUG91e-82BH066_ARATH; Transcription factor bHLH66
TrEMBLA0A0J8C0S60.0A0A0J8C0S6_BETVU; Uncharacterized protein
STRINGPOPTR_0018s11800.11e-119(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.11e-42LJRHL1-like 1